Bioinformatics

• Scalable Convex Multiple Sequence Alignment via Entropy-Regularized Dual Decomposition (pdf, software)
  J. Zhang, I. Yen, P. Ravikumar, I. Dhillon.
  In International Conference on Artificial Intelligence and Statistics (AISTATS), April 2017.
• A Convex Atomic-Norm Approach to Multiple Sequence Alignment and Motif Discovery (pdf, slides, poster, software)
  I. Yen, X. Lin, J. Zhang, P. Ravikumar, I. Dhillon.
  In International Conference on Machine Learning (ICML), June 2016. (Oral)
• PU Matrix Completion with Graph Information
  N. Natarajan, N. Rao, I. Dhillon.
  International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), December 2015.
• Inductive matrix completion for predicting gene-disease associations (pdf, software)
  N. Natarajan, I. Dhillon.
  Bioinformatics 30(12), pp. i60-i68, June 2014.
• Prediction and Validation of Gene-Disease Associations using Methods Inspired by Social Network Analyses (pdf, software)
  U. Singh-Blom, N. Natarajan, A. Tewari, J. Woods, I. Dhillon, E. Marcotte.
  PLoS ONE 8(5), May 2013.
  (e58977)
• Co-clustering of Human Cancer Microarrays using Minimum Sum-Squared Residue Co-clustering (pdf, software)
  H. Cho, I. Dhillon.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 5(3), pp. 385-400, July 2008.
• Diametrical Clustering for identifying Anti-Correlated Gene Clusters (pdf, software)
  I. Dhillon, E. Marcotte, U. Roshan.
  Bioinformatics 19(13), pp. 1612-1619, September 2003.
• Diametrical Clustering for identifying Anti-Correlated Gene Clusters (pdf, software)
  I. Dhillon, E. Marcotte, U. Roshan.
  University of Texas Computer Science Technical Report (UTCS Technical Report) TR-02-49, September 2002.